- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Class | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | galGal3-4 | mir-216 | ptr-miR-216a | 19/21 | chr1 | + | 22-41 | 157545727-157545815 | 0.950408 | Paralog | 24/39 | 3/67 |
2 | galGal3-2 | mir-1814 | gga-miR-1814 | 19/20 | chr1 | + | 49-68 | 107938688-107938759 | 0.909091 | Paralog | 1/42 | 14/174 |
3 | galGal3-5 | mir-1701 | gga-miR-1701 | 19/20 | chr1 | + | 50-69 | 182882216-182882294 | 0.909666 | Paralog | 1/19 | 3/41 |
4 | galGal3-6 | mir-1811 | gga-miR-1811 | 19/20 | chr1 | + | 52-71 | 188939769-188939855 | 0.87919 | Paralog | 1/2 | 4/5 |
5 | galGal3-3 | mir-1816 | gga-miR-1816 | 18/20 | chr1 | + | 53-70 | 113111795-113111889 | 0.946117 | Paralog | 1/20 | 3/37 |
6 | galGal3-14 | mir-1556 | gga-miR-1556 | 20/22 | chr1 | - | 20-40 | 116573051-116573140 | 0.966796 | Paralog | 1/1 | 2/2 |
7 | galGal3-16 | mir-146 | hsa-miR-146a* | 20/22 | chr1 | - | 36-56 | 182214837-182214940 | 0.990762 | Paralog | 12/31 | 4/55 |
8 | galGal3-8 | mir-1814 | gga-miR-1814 | 18/20 | chr1 | - | 40-57 | 23084323-23084431 | 0.896318 | Paralog | 1/42 | 14/174 |
9 | galGal3-7 | mir-1814 | gga-miR-1814 | 18/20 | chr1 | - | 40-57 | 7193778-7193885 | 0.870598 | Paralog | 1/42 | 14/174 |
10 | galGal3-13 | mir-1770 | gga-miR-1770 | 20/22 | chr1 | - | 49-70 | 112616085-112616157 | 0.955855 | Paralog | 1/12 | 3/18 |
11 | galGal3-12 | mir-125 | bfl-miR-125b-as | 22/22 | chr1 | - | 49-70 | 102457652-102457731 | 0.99566 | Paralog | 45/62 | 2/195 |
12 | galGal3-17 | mir-1677 | gga-miR-1677 | 20/22 | chr10 | + | 51-72 | 21460934-21461020 | 0.998277 | Paralog | 1/3 | 7/13 |
13 | galGal3-18 | mir-1814 | gga-miR-1814 | 19/20 | chr10 | - | 51-70 | 8038926-8039018 | 0.87113 | Paralog | 1/42 | 14/174 |
14 | galGal3-20 | mir-140 | mne-miR-140 | 19/21 | chr11 | - | 17-36 | 21030647-21030733 | 0.998527 | Paralog | 15/31 | 3/51 |
15 | galGal3-19 | mir-1701 | gga-miR-1701 | 19/20 | chr11 | - | 49-68 | 16363532-16363622 | 0.951545 | Paralog | 1/19 | 3/41 |
16 | galGal3-21 | mir-1815 | gga-miR-1815 | 19/21 | chr12 | - | 25-44 | 15444035-15444128 | 0.995374 | Paralog | 1/22 | 2/45 |
17 | galGal3-23 | mir-103 | hsa-miR-103-as | 23/23 | chr13 | - | 11-33 | 4449239-4449320 | 0.940429 | Paralog | 21/38 | 4/118 |
18 | galGal3-26 | mir-1465 | gga-miR-1465 | 19/21 | chr14 | - | 11-30 | 13555261-13555341 | 0.985607 | Paralog | 1/5 | 3/8 |
19 | galGal3-27 | mir-1465 | gga-miR-1465 | 19/21 | chr14 | - | 11-30 | 13558059-13558139 | 0.985607 | Paralog | 1/5 | 3/8 |
20 | galGal3-25 | mir-1596 | gga-miR-1596* | 20/22 | chr14 | - | 20-41 | 5189720-5189809 | 0.918179 | Paralog | 1/1 | 2/2 |
21 | galGal3-24 | mir-1677 | gga-miR-1677 | 21/22 | chr14 | - | 49-70 | 322228-322319 | 0.924341 | Paralog | 1/3 | 7/13 |
22 | galGal3-28 | mir-1594 | gga-miR-1594 | 20/21 | chr16 | + | 35-55 | 71433-71536 | 0.804694 | Paralog | 1/15 | 8/24 |
23 | galGal3-29 | mir-1620 | gga-miR-1620 | 20/22 | chr17 | - | 48-68 | 3546729-3546803 | 0.999901 | Paralog | 1/3 | 3/9 |
24 | galGal3-31 | mir-219 | hsa-miR-219-2-3p | 20/22 | chr18 | - | 39-60 | 240751-240860 | 0.809386 | Paralog | 38/52 | 2/89 |
25 | galGal3-39 | mir-1 | mmu-miR-1-2-as | 21/21 | chr2 | + | 10-30 | 105673486-105673564 | 0.965483 | Paralog | 41/61 | 6/166 |
26 | galGal3-32 | mir-1814 | gga-miR-1814 | 19/20 | chr2 | + | 27-46 | 55165505-55165599 | 0.813202 | Paralog | 1/42 | 14/174 |
27 | galGal3-34 | mir-1814 | gga-miR-1814 | 19/20 | chr2 | + | 38-57 | 61163119-61163223 | 0.902113 | Paralog | 1/42 | 14/174 |
28 | galGal3-36 | mir-1786 | gga-miR-1786 | 19/21 | chr2 | + | 45-63 | 80399951-80400015 | 0.827026 | Paralog | 1/1 | 2/2 |
29 | galGal3-35 | mir-466 | mmu-miR-466a-5p | 20/22 | chr2 | + | 51-72 | 63627450-63627532 | 0.991084 | Paralog | 3/29 | 3/178 |
30 | galGal3-41 | mir-1730 | gga-miR-1730 | 20/22 | chr2 | - | 13-34 | 7863216-7863299 | 0.976997 | Paralog | 1/3 | 2/4 |
31 | galGal3-43 | mir-1770 | gga-miR-1770 | 20/22 | chr2 | - | 49-70 | 17957091-17957182 | 0.801253 | Paralog | 1/12 | 3/18 |
32 | galGal3-42 | mir-1768 | gga-miR-1768 | 20/22 | chr2 | - | 50-70 | 14046702-14046788 | 0.999867 | Paralog | 1/3 | 2/4 |
33 | galGal3-46 | mir-1557 | gga-miR-1557 | 19/20 | chr2 | - | 50-68 | 116867231-116867319 | 0.976295 | Paralog | 1/1 | 2/2 |
34 | galGal3-48 | mir-1816 | gga-miR-1816 | 18/20 | chr20 | + | 53-70 | 4371513-4371599 | 0.995164 | Paralog | 1/20 | 3/37 |
35 | galGal3-50 | mir-1 | mmu-miR-1-2-as | 21/21 | chr20 | - | 11-31 | 8107825-8107905 | 0.917091 | Paralog | 41/61 | 6/166 |
36 | galGal3-51 | mir-1677 | gga-miR-1677 | 20/22 | chr21 | + | 51-72 | 3379985-3380071 | 0.999352 | Paralog | 1/3 | 7/13 |
37 | galGal3-52 | mir-1811 | gga-miR-1811 | 19/20 | chr22 | + | 52-71 | 3735926-3736009 | 0.929335 | Paralog | 1/2 | 4/5 |
38 | galGal3-53 | mir-1677 | gga-miR-1677 | 20/22 | chr22 | - | 21-42 | 489669-489760 | 0.971885 | Paralog | 1/3 | 7/13 |
39 | galGal3-54 | mir-190 | bmo-miR-190 | 21/23 | chr22 | - | 49-71 | 3129943-3130021 | 0.81252 | Paralog | 24/55 | 2/95 |
40 | galGal3-55 | mir-1594 | gga-miR-1594 | 20/21 | chr23 | + | 4-24 | 2485925-2485997 | 0.94242 | Paralog | 1/15 | 8/24 |
41 | galGal3-56 | mir-1594 | gga-miR-1594 | 19/21 | chr25 | - | 23-41 | 1856509-1856599 | 0.95172 | Paralog | 1/15 | 8/24 |
42 | galGal3-58 | mir-1616 | gga-miR-1616 | 20/22 | chr28 | + | 51-71 | 2023569-2023663 | 0.953936 | Paralog | 1/2 | 2/4 |
43 | galGal3-59 | mir-1648 | gga-miR-1648 | 20/21 | chr3 | + | 21-40 | 31602640-31602726 | 0.957062 | Paralog | 1/8 | 2/11 |
44 | galGal3-60 | mir-1743 | gga-miR-1743 | 20/22 | chr3 | + | 23-44 | 41232687-41232778 | 0.998737 | Paralog | 1/2 | 3/4 |
45 | galGal3-62 | mir-1777 | gga-miR-1777 | 19/20 | chr3 | - | 4-22 | 54566403-54566475 | 0.821741 | Paralog | 1/1 | 2/2 |
46 | galGal3-67 | mir-103 | hsa-miR-103-as | 23/23 | chr4 | + | 11-33 | 91906888-91906969 | 0.954969 | Paralog | 21/38 | 4/118 |
47 | galGal3-68 | mir-1594 | gga-miR-1594 | 19/21 | chr4 | + | 17-35 | 93226174-93226257 | 0.993933 | Paralog | 1/15 | 8/24 |
48 | galGal3-65 | mir-1721 | gga-miR-1721 | 19/21 | chr4 | + | 25-44 | 29204105-29204194 | 0.812539 | Paralog | 1/3 | 2/4 |
49 | galGal3-63 | mir-222 | oan-miR-222b | 23/23 | chr4 | + | 50-72 | 2151189-2151266 | 0.991558 | Paralog | 14/31 | 2/40 |
50 | galGal3-66 | mir-1641 | gga-miR-1641 | 20/22 | chr4 | + | 51-72 | 36272628-36272720 | 0.989365 | Paralog | 1/2 | 2/5 |
51 | galGal3-70 | mir-1689 | gga-miR-1689* | 20/22 | chr4 | - | 49-70 | 38866108-38866182 | 0.99495 | Paralog | 1/4 | 2/5 |
52 | galGal3-73 | mir-301 | mmu-miR-301a | 21/23 | chr5 | + | 50-72 | 45811063-45811137 | 0.983691 | Paralog | 14/32 | 3/60 |
53 | galGal3-73 | mir-301 | dre-miR-301a | 20/22 | chr5 | + | 51-72 | 45811062-45811137 | 0.989269 | Paralog | 14/32 | 3/60 |
54 | galGal3-76 | mir-1811 | gga-miR-1811 | 19/20 | chr5 | - | 19-38 | 62061078-62061165 | 0.993983 | Paralog | 1/2 | 4/5 |
55 | galGal3-79 | mir-1677 | gga-miR-1677 | 20/22 | chr6 | + | 51-72 | 32680307-32680390 | 0.999797 | Paralog | 1/3 | 7/13 |
56 | galGal3-77 | mir-1668 | gga-miR-1668 | 19/21 | chr6 | + | 52-71 | 10813091-10813176 | 0.988329 | Paralog | 1/1 | 2/2 |
57 | galGal3-82 | mir-140 | oan-miR-140* | 19/20 | chr6 | - | 21-40 | 25444842-25444932 | 0.824985 | Paralog | 15/31 | 3/51 |
58 | galGal3-81 | mir-1677 | gga-miR-1677 | 20/22 | chr6 | - | 49-70 | 20564079-20564159 | 0.979259 | Paralog | 1/3 | 7/13 |
59 | galGal3-83 | mir-1812 | gga-miR-1812 | 20/22 | chr7 | + | 19-40 | 1263807-1263894 | 0.999969 | Paralog | 1/2 | 2/3 |
60 | galGal3-85 | mir-466 | mmu-miR-466a-5p | 20/22 | chr7 | + | 33-54 | 32744870-32744971 | 0.947948 | Paralog | 3/29 | 3/178 |
61 | galGal3-84 | mir-1638 | gga-miR-1638 | 19/20 | chr7 | + | 40-59 | 26746119-26746225 | 0.856634 | Paralog | 1/23 | 2/58 |
62 | galGal3-87 | mir-1594 | gga-miR-1594 | 20/21 | chr8 | + | 8-28 | 21342402-21342475 | 0.978829 | Paralog | 1/15 | 8/24 |
63 | galGal3-88 | mir-1455 | gga-miR-1455 | 19/21 | chr8 | + | 43-62 | 27938386-27938495 | 0.810385 | Paralog | 1/1 | 2/2 |
64 | galGal3-86 | mir-1814 | gga-miR-1814 | 19/20 | chr8 | + | 52-70 | 1488819-1488906 | 0.887914 | Paralog | 1/42 | 14/174 |
65 | galGal3-89 | mir-1814 | gga-miR-1814 | 19/20 | chr9 | + | 52-71 | 17855871-17855962 | 0.926538 | Paralog | 1/42 | 14/174 |
66 | galGal3-96 | mir-1594 | gga-miR-1594 | 20/21 | chrUn_random | + | 4-24 | 41264702-41264774 | 0.98974 | Paralog | 1/15 | 8/24 |
67 | galGal3-94 | mir-458 | oan-miR-458* | 20/20 | chrUn_random | + | 14-33 | 30704148-30704229 | 0.999947 | Paralog | 5/9 | 2/10 |
68 | galGal3-94 | mir-458 | gga-miR-458* | 21/21 | chrUn_random | + | 16-36 | 30704146-30704230 | 0.999963 | Paralog | 5/9 | 2/10 |
69 | galGal3-97 | mir-1814 | gga-miR-1814 | 18/20 | chrUn_random | + | 40-57 | 41461689-41461795 | 0.856466 | Paralog | 1/42 | 14/174 |
70 | galGal3-94 | mir-458 | tni-miR-458 | 20/22 | chrUn_random | + | 50-71 | 30704148-30704229 | 0.999976 | Paralog | 5/9 | 2/10 |
71 | galGal3-93 | mir-1814 | gga-miR-1814 | 20/20 | chrUn_random | + | 52-71 | 24255716-24255796 | 0.912731 | Paralog | 1/42 | 14/174 |
72 | galGal3-91 | mir-1594 | gga-miR-1594 | 19/21 | chrUn_random | + | 52-71 | 18472607-18472686 | 0.983194 | Paralog | 1/15 | 8/24 |
73 | galGal3-90 | mir-1587 | gga-miR-1587 | 18/20 | chrUn_random | + | 53-70 | 5609609-5609686 | 0.904773 | Paralog | 1/22 | 2/61 |
74 | galGal3-101 | mir-1743 | gga-miR-1743 | 20/22 | chrUn_random | - | 24-45 | 28876303-28876396 | 0.998797 | Paralog | 1/2 | 3/4 |
75 | galGal3-102 | mir-1814 | gga-miR-1814 | 19/20 | chrUn_random | - | 39-58 | 55734971-55735033 | 0.912445 | Paralog | 1/42 | 14/174 |
76 | galGal3-99 | mir-1570 | gga-miR-1570 | 23/23 | chrUn_random | - | 48-70 | 23309945-23310021 | 0.996327 | Paralog | 1/1 | 2/2 |
77 | galGal3-100 | mir-1726 | gga-miR-1726 | 22/22 | chrUn_random | - | 49-70 | 26572537-26572614 | 0.999843 | Paralog | 1/6 | 2/8 |
78 | galGal3-98 | mir-1684 | gga-miR-1684 | 21/22 | chrUn_random | - | 49-70 | 13277366-13277442 | 0.998602 | Paralog | 1/1 | 2/2 |
79 | galGal3-106 | mir-31 | mml-miR-31 | 19/21 | chrZ | + | 6-25 | 52467570-52467643 | 0.870068 | Paralog | 40/60 | 2/107 |
80 | galGal3-104 | mir-1814 | gga-miR-1814 | 18/20 | chrZ | + | 51-68 | 34548647-34548727 | 0.860281 | Paralog | 1/42 | 14/174 |
81 | galGal3-107 | mir-1620 | gga-miR-1620 | 21/22 | chrZ | + | 51-71 | 58154326-58154409 | 0.953397 | Paralog | 1/3 | 3/9 |
82 | galGal3-105 | mir-1814 | gga-miR-1814 | 19/20 | chrZ | + | 52-71 | 37201544-37201640 | 0.822849 | Paralog | 1/42 | 14/174 |
Total | 82 record(s). |